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Table 1 List of recombination events inferred in EACMV-like sequences

From: East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus

 

Event number

Recombinant *

Region

Minor Parent *

Major Parent *

Methodsα

P-valueβ

Begin

End

DNA-A

1

EACMV-UG

545

1008

ACMV

EACMV

RGBMCST

1.2x10-71

2

EACMCV

1052

1872

Unknown

EACMV

RGBMCST

1.3x10-89

3

EACMKV, EACMZV, SACMV

1835

9

ToLCV-like

EACMV

RGBMCST

6.7x10-53

4

EACMV-KE

1878 $

2083

EACMZV

EACMV

RGBMCST

1.4x10-24

5

EACMMV, SACMV

178

999 $

ToLCV/TYLCV-like

EACMV

RGBMCST

4.9x10-20

6

EACMMV

1843 $

2311

EACMKV

EACMV

RGBMCST

6.0x10-15

7

EACMZV

1840 $

2184

EACMKV

Unknown

RGBMCST

6.7x10-22

8

EACMV, EACMMV

2052 $

2360

Unknown

Unknown

RGBMCST

7.2x10-16

9

EACMV

1821

1935

ACMV

EACMV

RGBs

1.0x10-10

10

EACMKV, SACMV

2625

2742 $

EACMV-like

Unknown

RGBMCS

1.3x10-11

11

ACMV

1788

1856

EACMV

ACMV

RgB

3.3x10-5

12

ToLCCV

2591

2646

EACMV

ToLCCV

RgBS

9.1x10-5

13

EACMV-like

190

451

Unknown

Unknown

rBcS

5.7x10-12

14

EACMCV

1056 $

1126

EACMCV

Unknown

rgBS

6.0x10-5

15

EACMV

2662

2684

Unknown

EACMV

Rgb

3.7x10-2

DNA-B

1

CMMGV

1564

2688

Unknown

EAC

RGBMCST

1.6x10-78

2

EACMV-[SC]

1124

1454

EACMCV-like

EAC

RGBMCST

5.8x10-21

3

EAC

2461

2704

EAC

EAC

RGBMCST

3.3x10-12

4

EAC

2672

5

Unknown

EAC

RGBMCST

5.6x10-13

5

CAM

1496

2503

EACMV-[SC]-like

Unknown

RGBMC

2.2x10-9

6

EAC

2612

37

EAC

EAC

RGBMCS

1.3x10-11

7

EAC

422

1647

Unknown

EAC

RMCST

1.3x10-6

8

EAC

723

1143

Unknown

EAC

RGBMCSt

3.2x10-6

 

9

EAC

1718

2751

EAC

EAC

BMCST

1.7x10-15

  1. * EAC corresponds to B components associated with EACMV, EACMKV, EAMCZV; CAM corresponds to EACMCV-B; CMMGV, Cassava mosaic Madagascar virus[MG:Tol:06]; EACMV-[SC] corresponds to East African cassava mosaic virus isolated in Seychelles; ToLCV, Tomato leaf curl virus; TYLCV, Tomato yellow leaf curl virus; ToLCCV: Tomato leaf curl Comoros virus.
  2. $ Breakpoints not inferred by RDP.
  3. α R: RDP; G: GENECONV; B: Bootscan; M: MaxChi; C: Chimaera; S: SiScan; T: 3Seq. Upper-case letters imply that a method detected recombination with a multiple comparison corrected P-value < 0.05, lower-case letters imply that the method detected recombination with a multiple comparison corrected P-value > 0.05
  4. β The reported P-value is for the method in bold type and is the best P-value calculated for the region in question.