From: Molecular adaptation and resilience of the insect’s nuclear receptor USP
Model | Likelihood Ratio Test | |||||
---|---|---|---|---|---|---|
No Shift | Branch relaxation | Branch positive selection Branch positive selection | Relaxation | positive selection | ||
M1a (nearly neutral) | modified branch-site model A ω_{2} = 1 fixed | modified branch-site model A | test 1 | test 2 | ||
LnL (np) | Ln L (np) | LnL (np) | ω _{ 2 } | p-value | p-value | |
Branch A | -11732.4 (55) | -11713.2 (56) | -11711.1 (57) | 999 | 6.6 10^{-11} | 4.2 10 ^{-2} |
Branch B | -9769.8 (41) | -9754.5 (42) | -9750.9 (43) | 97.3 | 8.0 10^{-9} | 6.8 10 ^{-3} |
Branch C | -6946.6 (25) | -6938.1 (26) | -6937.5 (27) | 4.75 | 1.1 10^{-4} | 0.56 |