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Table 1 Fitness of evolved viruses relative to the ancestral and predecessor strains, on the typical host P. phaseolicola , and the novel host P. pseudoalcaligenes ERA

From: Evolutionary genomics of host-use in bifurcating demes of RNA virus phi-6

Clone

Fitness on PP1

Relative to A12

Relative to predecessor3

Fitness on ERA1

Relative to B14

Relative to predecessor3

A1 (anc)

0.298 (0.062)

n.a.

n.a.

---

n.a.

n.a.

B1

0.180 (0.226)

  

−1.373 (0.262)

n.a.

n.a.

C1

−0.630 (0.219)

↓

↓

−0.437 (0.221)

↑

↑

C2

0.121 (0.168)

  

---

---

---

D1

−0.875 (0.083)

↓

 

−0.277 (0.159)

↑

 

D2

−0.697 (0.236)

↓

 

−0.527 (0.316)

↑

 

D3

0.272 (0.167)

  

---

---

---

D4

0.327 (0.069)

 

↑

---

---

---

E1

−0.935 (0.140)

↓

 

−0.432 (0.097)

↑

 

E2

−0.855 (0.123)

↓

 

−0.256 (0.104)

↑

 

E3

−0.651 (0.199)

↓

 

−0.395 (0.222)

↑

 

E4

−0.640 (0.170)

↓

 

0.075 (0.275)

↑

↑

E5

−0.583 (0.185)

↓

↓

---

---

---

E6

0.287 (0.065)

  

−0.379 (0.237)

↑

---

E7

−0.490 (0.122)

↓

↓

---

---

---

E8

0.362 (0.228)

  

---

---

---

F1

−0.480 (0.209)

↓

↑

---

---

---

F2

−0.219 (0.264)

↓

↑

0.005 (0.265)

↑

↑

F3

−0.694 (0.167)

↓

 

−0.264 (0.140)

↑

 

F4

0.142 (0.041)

↑

↑

−0.242 (0.163)

↑

 

F5

−0.550 (0.278)

↓

 

−0.045 (0.182)

↑

↑

F6

−0.401 (0.078)

↓

↑

---

---

---

F7

0.387 (0.108)

 

↑

0.510 (0.242)

↑

↑

F8

0.101 (0.157)

 

↑

0.698 (0.122)

↑

↑

F9

−0.058 (0.114)

↓

↑

---

---

---

F10

−0.066 (0.050)

↓

↑

---

---

---

F11

0.283 (0.181)

  

−0.332 (0.258)

↑

 

F12

0.287 (0.101)

  

−0.222 (0.185)

↑

 

F13

−0.048 (0.168)

↓

↑

---

---

---

F14

−0.845 (0.199)

↓

↓

---

---

---

F15

0.494 (0.178)

  

1.028 (0.148)

↑

---

F16

0.445 (0.117)

  

---

---

---

  1. 1 Values are means (std. dev.) of six log fitness estimates; ↑ and ↓ indicate significantly higher and lower fitness relative to ancestor or to immediate predecessor clone; open cells indicate no statistical difference; --- indicates test could not be performed.
  2. 2 Tested relative to Bonferroni corrected probability of 0.0016.
  3. 3 Tested relative to Bonferroni corrected probability of 0.025.
  4. 4 Tested relative to Bonferroni corrected probability of 0.003.