Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes

Li, Dong; Guo, Yiran; Shao, Haojing; Tellier, Laurent C; Wang, Jun; Xiang, Zhonghuai; Xia, Qingyou

doi:10.1186/1471-2148-10-81

Table 1 The detailed information of samples and sequencing summary

From: Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes

Sample ID	Name of strain	System or location	Effective Depth (X)	Genome coverage (%)	DifferenceRate (%)
D1	J7532	Japan	68.98	99.62	0.48
D2	J04-010	Japan	13.04	96.33	0.56
D3	J872	Japan	36.28	99.90	1.27
D4	J106	Japan	9.14	95.88	0.51
D5	N4	Japan	77.62	99.92	1.54
D6	Cambodia	Cambodia	32.67	99.98	0.65
D7	Lao II	Laos	12.88	97.42	1.32
D8	India M3	India	51.2	99.22	0.44
D9	Europe18	Europe	23.82	99.46	0.51
D10	Italy16	Italy, Europe	24.12	99.46	0.35
D11	Soviet Union NO.1	Former SU, Europe	10.98	94.75	0.41
D12	15-010	Mutation	8.99	93.71	1.28
D13	02-210	Mutation	51.37	99.96	0.43
D14	15-001	Mutation	49.61	99.72	1.36
D15	Mutation M₂	Mutation	22.03	99.62	1.32
D16	A06E	Guangdong province, China	75.04	99.71	1.52
D17	Damao	Sichuan province, China	28.66	99.11	0.64
D18	Ankang NO.4	Shanxi province, China	79.93	99.91	0.62
D19	ZT500	Gansu province, China	165.42	99.99	0.61
D20	Zhugui	Zhejiang province, China	77.61	99.77	0.43
D21	Bilian	Jiangsu province, China	62.83	99.49	1.4
D22	ZT900	Sichuan province, China	80.81	99.61	1.05
D23	ZT100	Hunan province, China	89.7	99.83	0.41
D24	Sihong	Jiangsu province, China	105.03	99.75	0.31
D25	Xiaoshiwan	Zhejiang province, China	20.46	98.31	0.59
D26	C108	Chongqing, China	27.57	92.66	0.4
D27	Sichuang M₃	Sichuan province, China	51.3	99.67	0.58
D28	ZT000	Guizhou province, China	166.85	99.96	0.53
D29	Handan	Hebei province, China	51.94	99.90	0.32
W1	B. mandarina Ziyang	Sichuan province, China	27.6	96.07	2.49
W2	B. mandarina Nanchong	Sichuan province, China	106.15	98.18	2.46
W3	B. mandarina Hongya	Sichuan province, China	25.27	94.18	1.94
W4	B. mandarina Pengshan	Sichuan province, China	76.03	95.45	1.95
W5	B. mandarina Ankang	Shanxi province, China	30.54	92.30	2.01
W6	B. mandarina Yichang	Hubei province, China	108.98	96.63	2.77
W7	B. mandarina Yancheng	Jiangsu province, China	72.06	97.10	2.03
W8	B. mandarina Luzhou	Sichuan province, China	40.54	92.45	2.33
W9	B. mandarina Hunan	Hunan province, China	114.57	96.91	2.03
W10	B. mandarina Suzhou	Jiangsu province, China	49.11	95.40	2.05
W11	B. mandarina Rongchang	Chongqing, China	79.31	95.89	2.04
W12	B. mandarina Japan	Hokkaido, Japan	13.52	81.47	0.81
Total	-	-	2319.56

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