Table 5 Selected sites in P. rapae NSP domains 2 and 3 identified by at least two of the methods
From: Microevolutionary dynamics of a macroevolutionary key innovation in a Lepidopteran herbivore
| Â | Â | Â | Analysis Method | |||
|---|---|---|---|---|---|---|
Codon | Domain | Sel. | SLAC | FEL | IFEL | REL |
276 | 2, exon 4 | Â | -37.08 (0.246) | -24.60 (0.236) | -24.60 (0.328) | -5.28 (3348.03; 0.001) |
277 | 2, exon 4 | N | -136.86 (0.004) | -120.18 (0.002) | -120.18 (0.010) | -17.83 (1,207,160,000.00; < 0.001) |
284 | 2, exon 5 | Â | -30.24 (0.302) | -22.12 (0.195) | -22.12 (0.280) | -1.36 (95.85; 0.029) |
287 | 2, exon 5 | N | -27.37 (0.333) | -59.18 (0.071) | -59.17 (0.115) | -13.32 (31,730.30; 0.001) |
299 | 2, exon 5 | Â | 12.69 (0.745) | 13.36 (0.358) | 23.00 (0.257) | 8.57 (260.85; 0.0013) |
303 | 2, exon 5 | Â | -37.08 (0.246) | -26.42 (0.224) | -26.41 (0.313) | -6.12 (3,645.68; 0.001) |
316 | 2, exon 5 | N | -93.32 (0.109) | -340.07 (0.020) | -340.07 (0.035) | -17.06 (49,267.90; 0.001) |
329 | 2, exon 5 | N | -46.91 (0.242) | -81.89 (0.070) | -81.89 (0.136) | -8.79 (2,163.10; 0.002) |
334 | 2, exon 5 | N | -111.25 (0.015) | -85.83 (0.006) | -85.82 (0.019) | -17.82 (55,812,800.00; < 0.001) |
338 | 2, exon 5 | Â | -27.37 (0.333) | -20.84 (0.181) | -20.83 (0.263) | -1.31 (93.12; 0.03) |
355 | 2, exon 5 | Â | 22.27 (0.672) | 29.94 (0.259) | 50.70 (0.163) | 8.53 (114.69; 0.0031) |
379 | 2, exon 5 | P | 28.03 (0.488) | 63.06 (0.108) | 201 (0.021) | 8.64 (2,410.59; < 0.001) |
389 | 2, exon 5 | Â | -29.36 (0.333) | -33.44 (0.161) | -33.44 (0.300) | -1.31 (93.37; 0.03) |
390 | 2, exon 5 | N | -29.36 (0.333) | -92.94 (0.087) | -92.95 (0.186) | -3.76 (143.98; 0.02) |
393 | 2, exon 5 | Â | -16.89 (0.579) | -35.67 (0.201) | -35.68 (0.355) | -1.30 (93.64; 0.03) |
395 | 2, exon 5 | Â | -29.36 (0.333) | -32.64 (0.181) | -32.64 (0.329) | -1.30 (92.46; 0.03) |
405 | 2, exon 5 | Â | -29.36 (0.333) | -32.54 (0.213) | -32.54 (0.369) | -1.30 (92.02; 0.031) |
430 | 3, exon 5 | N | -39.78 (0.246) | -40.08 (0.123) | -40.08 (0.244) | -1.55 (103.69; 0.027) |
434 | 3, exon 5 | Â | -32.44 (0.302) | -35.73 (0.192) | -35.73 (0.342) | -1.38 (96.44; 0.029) |
437 | 3, exon 5 | N | -102.62 (0.109) | -585.52 (0.019) | -585.52 (0.046) | -11.21 (344.05; 0.009) |
441 | 3, exon 5 | N | -119.35 (0.015) | -161.93 (0.021) | -161.93 (0.086) | -17.73 (830,226.00; 0.001) |
467 | 3, exon 5 | Â | 22.31 (0.508) | 30.17 (0.245) | 36.57 (0.244) | 3.11 (333.06; <0.001) |
480 | 3, exon 5 | N | -96.13 (0.004) | -124.06 (0.001) | -124.08 (0.0114) | -37.22 (30,456.40; 0.0001) |
483 | 3, exon 6 | N | -19.22 (0.333) | -22.54 (0.132) | -22.54 (0.2689) | -2.80 (174.20; 0.032) |
493 | 3, exon 6 | N | -38.45 (0.111) | -54.50 (0.026) | -54.50 (0.0975) | -6.97 (194.36; 0.028) |
505 | 3, exon 7 | Â | 19.00 (0.455) | 19.49 (0.204) | 24.46 (0.203) | 3.19 (845.98; <0.001) |
508 | 3, exon 7 | N | -38.45 (0.111) | -56.79 (0.023) | -56.79 (0.0909) | -7.59 (201.55; 0.027) |
523 | 3, exon 7 | P | 28.57 (0.306) | 28.63 (0.122) | n/a | 3.20 (12725.90; <0.001) |
532 | 3, exon 7 | N | -19.22 (0.333) | -26.85 (0.114) | -26.85 (0.2402) | -3.05 (174.17; 0.032) |
548 | 3, exon 7 | Â | 16.83 (0.635) | 24.43 (0.372) | 63.24 (0.181) | 3.05 (114.56; 0.001) |
573 | 3, exon 7 | Â | 16.84 (0.636) | 24.32 (0.388) | 30.54 (0.363) | 3.04 (98.82; 0.001) |
580 | 3, exon 7 | N | -184.42 (0.000) | -239.57 (< 0.001) | -239.57 (0.0021) | -37.41 (1,829,600.00; <0.001) |
594 | 3, exon 7 | N | -19.22 (0.333) | -27.67 (0.110) | -27.67 (0.2337) | -3.06 (175.61; 0.031) |