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Table 1 List of completely sequenced Acinetobacter plasmids and chromosomes used in this work.

From: Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

Strains

Plasmids

Chromosomes

Species and/or designation

Origin

n.

Name

A.N.

Length (bp)

ORF(s)

n.

Length (bp)

A.N.

ORF(s)

Acinetobacter baumannii

Clin.

1

pABIR

NC_010481

29823

26

n.d.

   

Acinetobacter baumannii ATCC19606T

Clin.

1

pMAC

NC_006877

9540

11

n.d.

   

 Acinetobacter baumannii

Clin.

1

pAB02

AY228470

4162

6

n.d.

   

Acinetobacter baumannii ACICU

Clin.

2

pACICU1

NC_010605

28279

28

1

3904116

NC_010611

3667

   

pACICU2

NC_010606

64366

64

    

Acinetobacter baumannii ATCC 17978

Clin.

2

pAB1

NC_009083

13408

11

1

3976747

NC_009085

3351

   

pAB2

NC_009084

11302

5

    

Acinetobacter baumannii AYE

Clin.

4

p1ABAYE

NC_010401

5644

7

1

3936291

NC_010410

3607

   

p2ABAYE

NC_010402

9661

11

    
   

p3ABAYE

NC_010403

94413

82

    
   

p4ABAYE

NC_010404

2726

5

    

Acinetobacter baumannii SDF

Body lice

3

p1ABSDF

NC_010395

6106

8

1

3421954

NC_010400

2913

   

p2ABSDF

NC_010396

25014

30

    
   

p3ABSDF

NC_010398

24922

24

    

Acinetobacter baumannii AB0057

Clin.

1

pAB0057

NC_011585

8729

11

1

4050513

NC_010410

3790

Acinetobacter baumannii AB307-0294

Clin.

0

    

1

3760981

NC_011595

3451

Acinetobacter sp. EB104

Unknown

1

pAC450

NC_002760

4379

4

n.d.

   

Acinetobacter sp. SUN

Clin.

1

pRAY

NC_000923

6076

10

n.d.

   

Acinetobacter venetianus

Env.

2

pAV1

NC_010309

10820

11

n.d.

   
   

pAV2

NC_010310

15135

16

    

Acinetobacter sp LUH5605

Env.

1

Ptet5605

AY228470

3727

4

n.d.

   

Acinetobacter sp BW3

Env.

1

pKLH207

AJ486856

9910

16

n.d.

   

Acinetobacter calcoaceticus KHW14

Env.

1

pKLH201

AJ251307

11191

14

n.d.

   

Acinetobacter calcoaceticus KHP18

Env.

1

pKLH2

AF213017

6838

12

n.d.

   

Acinetobacter sp ED23-35

Env.

1

pKLH208

AJ251272

9435

15

n.d.

   

Acinetobacter sp ED45-25

Env.

1

pKLH205

AJ459234

8561

13

n.d.

   

Acinetobacter junii

Env.

1

pKLH203

AJ486855

7195

12

n.d.

   

Acinetobacter sp LS56-7

Env.

1

pKLH204

AJ487050

9489

15

n.d.

   

Acinetobacter lwoffii

Env.

1

pKLH202

AJ486857

9471

17

n.d.

   

Acinetobacter sp YAA*

Env.

1

pYA1

D86080

7407

5

n.d.

   

Acinetobacter baylyi ADP1

Env.

0

    

1

3598621

NC_005966

3307

Tot.

 

29

   

493

7

  

24086

  1. Sequences were downloaded from the NCBI web-site http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genomes/genlist.cgi?taxid=2&type=1&name=Bacteria%20Complete%20Chromosomes and from the FTP repository ftp://ftp.ncbi.nih.gov/refseq/release/plasmid/ (as on 31st March 2009 ). N.d. "not determined", A.N. "accession number".
  2. * These plasmids were retrieved in strains lacking a clear taxonomical affiliation [56, 57]
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BMC Ecology and Evolution

ISSN: 2730-7182

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