Table 3 Subcellular localization of the CBSGs, ALSGs, ECs, and TAIR8 non-TE protein-coding genes
From: Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana
| Â | No. of genes (%) | No. of known genes | No. of expressed genes |
|---|---|---|---|
CBSGs | Â | Â | Â |
Chloroplast | 37 (4.0) | 7 | 30 |
Mitochondrion | 70 (7.7) | 11 | 62 |
Secretory pathway | 412 (45.1) | 107 | 285 |
Other | 395 (43.2) | 93 | 324 |
Uncertain | 0 (0.0) | 0 | 0 |
Total | 914 (100.0) | 218 | 701 |
ALSGs | Â | Â | Â |
Chloroplast | 61 (4.6) | 4 | 45 |
Mitochondrion | 229 (17.3) | 10 | 109 |
Secretory pathway | 271 (20.5) | 11 | 130 |
Other | 763 (57.6) | 49 | 416 |
Uncertain | 0 (0.0) | 0 | 0 |
Total | 1,324 (100.0) | 74 | 700 |
ECs | Â | Â | Â |
Chloroplast | 3,909 (15.9) | 3,023 | 3,837 |
Mitochondrion | 2,834 (11.5) | 2,149 | 2,773 |
Secretory pathway | 4,751 (19.3) | 3,838 | 4,498 |
Other | 13,117 (53.5) | 10,515 | 12,482 |
Uncertain | 13 (0.1) | 9 | 13 |
Total | 24,624 (100.0) | 19,534 | 23,603 |
TAIR8 non-TE Protein-coding Genes | Â | Â | Â |
Chloroplast | 4,007 (14.9) | 3,034 | 3,912 |
Mitochondrion | 3,133 (11.7) | 2,170 | 2,944 |
Secretory pathway | 5,434 (20.2) | 3,956 | 4,913 |
Other | 14,275 (53.1) | 10,657 | 13,222 |
Uncertain | 13 (0.0) | 9 | 13 |
Total | 26,862 (100.0) | 19,826 | 25,004 |