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Table 1 Genic features of the CBSGs, ALSGs, ECs, and TE-related genes

From: Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana

 

CBSGs

ALSGs

ECs

TE-related genes

Feature

Mean

(SD)

Median

Mean

(SD)

Median

Mean

(SD)

Median

Mean

(SD)

Median

Exons/gene

2.2

(1.6)

2

1.7

(1.4)

1

6.0

(5.2)

4

1.7

(2.4)

1

Exon length

256

(250)

182

213

(221)

147

280

(352)

155

1,336

(1,675)

522

Intron length

205

(263)

109

227

(321)

114

163

(172)

99

160

(186)

96

Gene length

827

(689)

598

537

(652)

261

2,315

(1,558)

1,998

2,420

(1,742)

2,072

Protein length

148

(112)

104

97

(85)

66

431

(298)

370

na

na

Exon GC (%)

41.0

(6.1)

40.7

42.3

(6.1)

42.2

42.6

(4.6)

42.6

42.7

(5.3)

42.3

Intron GC (%)

31.5

(7.4)

31.3

35.1

(7.6)

34.4

32.4

(4.4)

32.7

32.8

(7.9)

31.9

Gene GC (%)

37.8

(5.0)

37.8

41.0

(5.1)

40.9

39.6

(3.3)

39.3

41.5

(4.6)

41.4

CDS/ORF GC(%)

42.2

(4.4)

42

42.8

(4.8)

42.7

44.5

(3.2)

44.2

na

na

   1st position GC (%)

45.5

(6.7)

45.6

45.7

(7.6)

45.7

50.2

(4.7)

50.2

na

na

   2nd position GC (%)

40.4

(6.5)

40

40.0

(7.7)

40

40.5

(5.4)

40.1

na

na

   3rd position GC (%)

40.8

(8.4)

40.9

42.8

(8.1)

42.9

42.9

(6.3)

42.1

na

na