- Research article
- Open Access
Gene structure, transcripts and calciotropic effects of the PTH family of peptides in Xenopus and chicken
- Pedro LC Pinheiro†1,
- João CR Cardoso†1,
- Ana S Gomes1,
- Juan Fuentes1,
- Deborah M Power1 and
- Adelino VM Canário1Email author
© Pinheiro et al; licensee BioMed Central Ltd. 2010
- Received: 12 July 2010
- Accepted: 1 December 2010
- Published: 1 December 2010
Parathyroid hormone (PTH) and PTH-related peptide (PTHrP) belong to a family of endocrine factors that share a highly conserved N-terminal region (amino acids 1-34) and play key roles in calcium homeostasis, bone formation and skeletal development. Recently, PTH-like peptide (PTH-L) was identified in teleost fish raising questions about the evolution of these proteins. Although PTH and PTHrP have been intensively studied in mammals their function in other vertebrates is poorly documented. Amphibians and birds occupy unique phylogenetic positions, the former at the transition of aquatic to terrestrial life and the latter at the transition to homeothermy. Moreover, both organisms have characteristics indicative of a complex system in calcium regulation. This study investigated PTH family evolution in vertebrates with special emphasis on Xenopus and chicken.
The PTH-L gene is present throughout the vertebrates with the exception of placental mammals. Gene structure of PTH and PTH-L seems to be conserved in vertebrates while PTHrP gene structure is divergent and has acquired new exons and alternative promoters. Splice variants of PTHrP and PTH-L are common in Xenopus and chicken and transcripts of the former have a widespread tissue distribution, although PTH-L is more restricted. PTH is widely expressed in fish tissue but from Xenopus to mammals becomes largely restricted to the parathyroid gland. The N-terminal (1-34) region of PTH, PTHrP and PTH-L in Xenopus and chicken share high sequence conservation and the capacity to modify calcium fluxes across epithelia suggesting a conserved role in calcium metabolism possibly via similar receptors.
The parathyroid hormone family contains 3 principal members, PTH, PTHrP and the recently identified PTH-L. In teleosts there are 5 genes which encode PTHrP (2), PTH (2) and PTH-L and in tetrapods there are 3 genes (PTHrP, PTH and PTH-L), the exception is placental mammals which have 2 genes and lack PTH-L. It is hypothesized that genes of the PTH family appeared at approximately the same time during the vertebrate radiation and evolved via gene duplication/deletion events. PTH-L was lost from the genome of eutherian mammals and PTH, which has a paracrine distribution in lower vertebrates, became the product of a specific endocrine tissue in Amphibia, the parathyroid gland. The PTHrP gene organisation diverged and became more complex in vertebrates and retained its widespread tissue distribution which is congruent with its paracrine nature.
- Parathyroid Gland
- Mature Protein
- Eutherian Mammal
- Calcium Transport
- Chicken Genome
Parathyroid hormone (PTH) and PTH-related peptide (PTHrP) belong to a family of endocrine factors with a highly conserved N-terminal region (amino acids 1-34), which accounts for their overlapping functions in calcium homeostasis [1–3]. In mammals, single copy PTH and PTHrP genes are proposed to share common ancestry [1, 3, 4] an idea reinforced by the identification of duplicate orthologous genes, PTH1 and 2, and PTHrP1 and 2 in teleost fishes [5–7] which underwent a specific genome duplication . However, the recent identification of a novel PTH-like (PTH-L) gene in teleosts throws into question previous evolutionary models for this gene family .
In mammals, PTH is a product of the parathyroid glands and pre-pro-PTH is processed to liberate the biologically active mature 84 amino acid hormone, which regulates serum calcium through its direct actions in bone and kidney counteracting the action of calcitonin [1, 9]. In contrast, PTHrP is a pluripotent hormone which acts via intracellular, paracrine and endocrine pathways and regulates cell growth and differentiation, bone development and lactation, and embryonic and fetal development and survival [10–13]. Tissue specific proteolytic processing of PTHrP occurs and generates at least three active fragments [4, 11, 14], of which only the N-terminal (1-36) fragment has a cognate family 2 G-protein coupled receptor, PTH1R, which also binds PTH . Moreover, alternative promoter utilization and exon splicing generates several different human PTHrP isoforms which range in length from 139-173 amino acids [4, 16]. In mammals, a second receptor (PTH2R) is activated by PTH and tuberoinfundibular peptide 39 (TIP39), while in teleost fish PTH2R is only activated by TIP39 [17, 18]. Moreover, in teleosts a paralogue of tetrapod PTH1R (designated PTH3R) with affinity for PTHrP also exists [19–23].
PTH and PTHrP have been intensively studied in mammals but their function in other vertebrates is poorly documented. In amphibians, PTH/PTHrP receptors have been characterized and an immunoreactive PTHrP-like peptide with widespread tissue distribution has been detected [24, 25]. In chicken, PTH and PTHrP homologues have also been isolated and are involved in chondroblast and osteoblast differentiation, although their role in calcium transport mechanisms is poorly understood [26–31]. Amphibians and birds occupy unique phylogenetic positions, the former at the transition of aquatic to terrestrial life, the latter at the transition to homeothermy, and both organisms have a complex system in calcium regulation. The presence of a parathyroid gland in frogs (not present in fish) coupled with their terrestrial/aquatic environment and the occurrence in birds of a hollow skeleton and heavily calcified eggs are examples of physiological/structural processes which influence calcium and phosphorus requirements.
The identification of new PTH family members in Xenopus sp. (Amphibia) and chicken, Gallus gallus (Aves) by in silico analysis of public databases and gene cloning is reported. Gene structure, gene linkage, alternative splicing and tissue specific transcription are also characterised. The calciotropic activity of Xenopus and chicken N-terminal (1-34) peptides of PTH family members in vitro are established using Xenopus skin and chicken chorionallantois membranes. Finally a model of PTH gene family evolution is proposed and discussed in the context of functional divergence.
Xenopus and chicken PTH family members
Gene structure and transcript isoforms
Transcripts - PTH
The Xenopus PTH gene was deduced in silico and revealed that exon 1 encodes the pre-pro-region of the protein and exon 2 the mature protein (Figure 2). Xenopus PTH cDNA was amplified by RT-PCR from the intestine (accession number FM955441) and the predicted protein has 118 amino acids and yields a mature protein of 87 amino acids. It was not possible to establish the nucleotide sequence of the 5' and 3' UTR of Xenopus PTH. The gene structure of chicken PTH was identical to the amphibian homologue but no evidence of alternative splicing was found (Figure 2). Chicken PTH has 119 amino acids and is identical to the previously described cDNA [NM_205452, [32, 33]]. Two ESTs were identified (CV890868 and CV041147) from cDNA of a mixture of chicken tissues (whole brain, ultimobranchial gland, parathyroid gland, cecum, tonsil, and primordial germ cells) and were identical to full-length PTH (accession numbers NM_205452 and M36522).
Transcripts - PTHrP
The deduced Xenopus PTHrP gene is composed of at least 10 exons (Figure 2). The first putative exon contains the pre-pro-peptide and part of the 5'UTR, although the full gene structure in this region remains to be elucidated. Exon 2 encodes the mature protein and part of the 3'UTR and yields Xenopus PTHrP(1-131) (XenPTHrP). The largest XenPTHrP transcript identified has 144 amino acids and results from intra-exon splicing of exon 2 to exon 3 as occurs in the homologue region (osteostatin) in the human PTHrP gene. Through alternative splicing, exon 3 donates 32 amino acids to the predicted protein and at least seven downstream exons generate a unique 3'UTR domain. Xenopus PTHrP encodes the largest 3'UTR region identified for this gene in vertebrates.
Two previously published mRNA (NM_205338 and AB175678) [34, 35] encode XenPTHrP 1-139 and 1-141 which share an identical amino acid sequence with the exception of two extra arginine (R) residues in the latter isoform contributed by exon (E3) (Figure 2). Two ESTs identified in the tailbud (stage 28-30) (accession numbers CR437266; CR433007) encode a predicted XenPTHrP of 180 amino acids which yields a mature protein of 144 amino acids [XenPTHrP(1-144)]. A second XenPTHrP isoform encoding a protein of 167 amino acids which generates a mature peptide of 131 amino acids [XenPTHrP(1-131)] was predicted from analysis of genomic sequences. The existence of XenPTHrP(1-131) transcript was confirmed by RT-PCR of bone (accession number FM955442).
The deduced chicken PTHrP gene is composed of at least 6 exons (Figure 2 and Additional file 5). The first three exons undergo alternative splicing and contain part of the 5'UTR (Additional file 5). Exon 4 encodes the remaining 5'UTR and part of the pre-pro-protein. The mature protein and part of the 3'UTR of chicken PTHrP(1-139) are included in exon 5. In common with human an intra-exon splice of exon 5 to 6 give rise to chicken PTHrP(1-141). This final exon encodes for the last 3 amino acids of PTHrP(1-141) and the 3'UTR.
Several chicken PTHrP (ckPTHrP) isoforms which differed in the 5' UTR and coding region were identified amongst isolated ESTs (Additional file 1). Five ESTs (BU252785, BU384898, BM489067, ENSGALESTT00000030972 and BU252877) differing in their 5'UTR region, encoded a ckPTHrP of 141 amino acids (Additional file 5). No ESTs for putative ckPTHrP(1-139) were identified in database searches although RT-PCR revealed it is expressed in several tissues (Additional file 6).
Transcripts - PTH-L
The gene structure of Xenopus PTH-L has only been partly elucidated and was composed of at least two exons and appears to have an identical gene structure to PTH. The deduced protein sequence of PTH-L (accession number FM955443) is 152 amino acids (Figure 2).
Two main transcripts for Xenopus PTH-L (XenPTH-L) were identified by clustering seven XenPTH-L ESTs (Additional file 1). One transcript (XenPTH-L5utrE1') was represented by three ESTs from gastrula stages 10.5-12 (AL964863) and a mixture of brain and spinal cord from tadpoles stages 58-64 (CN076481; CN076482). The second transcript (XenPTH-L5utrE2') was represented by four ESTs from gastrula stages 10.5-12 (AL775245; AL965929; BX750398; BX764109). The deduced XenPTH-L was 118 amino acids long and yielded a mature protein of 86 amino acids (Figure 2 and Additional file 2).
The chicken PTH-L gene had a similar structure to the PTH gene and was composed of two exons and one intron. No ESTs for ckPTH-L were identified although RT-PCR indicated it is expressed in several tissues (Additional file 6).
Short-range gene environment comparisons
PTH family genes expression
PTH-L had a widespread tissue distribution in Xenopus and the highest transcript abundance (copy number relative to 18S) was detected in brain, lung and bone (Figure 5). Xenopus PTHrP transcripts were detected in brain, lung, skin and heart and were low abundance in spleen and muscle (Figure 5). It was not possible to design q-PCR primers which discriminated between the two Xenopus PTHrP transcripts. However, RT-PCR (Additional file 6) revealed both transcripts have a similar distribution. Xenopus PTH was expressed in bone, kidney, lung and nervous tissue (mixed brain and pituitary). The presence of PTH family members was not established in the amphibian parathyroid gland as its small size and variable morphology made it difficult to collect .
In chicken, PTH transcripts were highly abundant in the parathyroid gland (Figure 5), although they were also detected at low abundance in the pituitary, thyroid, bone and cartilage. Chicken PTHrP transcripts were widely expressed (Figure 5) and the various isoforms had a differential tissue distribution suggesting they may have different functional roles. ckPTHrP(1-141)5utrB and ckPTHrP(1-141)5utrC were the most abundant transcripts (copy number relative to 18S) and were mainly found in cartilage. ckPTHrP(1-141)5utrB, ckPTHrP(1-141)5utrC and ckPTHrP(1-141)5utrD transcripts had a similar tissue distribution. The tissue distribution of ckPTHrP(1-139) overlapped with ckPTHrP(1-141)5utrA with the exception of cartilage in which the latter transcript was absent. ckPTHrP(1-139) was highly expressed in muscle and was the only isoform which was not detected in the parathyroid gland. It was also absent from bone together with ckPTHrP(1-141)5utrA. In contrast, both isoforms were expressed in kidney where ckPTHrP(1-141)5utrB and PTHrP(1-141)5utrC were not detected. ckPTH-L transcripts had a similar tissue distribution to ckPTHrP (Figure 5) and were most abundant in cartilage but were also present in pituitary, thyroid, parathyroid glands, muscle, hind brain and kidney.
Transepithelial calcium transport
Variation in bioelectric values of Xenopus abdominal skin and chicken CAM measured in vitro prior and at different times after the basolateral application of 10 nM of Xenopus or chicken PTH(1-34) family peptides.
Time after hormone application (min)
PTH (n = 11)
2.49 ± 0.34
2.45 ± 0.33
2.43 ± 0.32
2.44 ± 0.30
2.48 ± 0.29
2.48 ± 0.30
2.49 ± 0.28
1143 ± 128
1157 ± 129
1164 ± 129
1130 ± 126
1160 ± 127
1164 ± 128
1167 ± 27
PTHrP (n = 12)
2.59 ± 0.31
2.63 ± 0.30
2.67 ± 0.29
2.74 ± 0.29
2.82 ± 0.28
*2.88 ± 0.27
*2.91 ± 0.25
1329 ± 140
1320 ± 122
1328 ± 122
1276 ± 104
1273 ± 98
1263 ± 95
1264 ± 95
PTH-L (n = 12)
2.36 ± 0.42
2.36 ± 0.43
2.39 ± 0.42
2.44 ± 0.42
2.51 ± 0.42
2.56 ± 0.43
*2.59 ± 0.43
1332 ± 81
1328 ± 75
1335 ± 79
1318 ± 79
1327 ± 78
1322 ± 76
1335 ± 76
PTH (n = 11)
7.41 ± 1.90
7.54 ± 1.84
7.39 ± 1.86
7.33 ± 1.88
7.02 ± 2.00
7.14 ± 2.06
7.03 ± 2.08
190 ± 20
191 ± 20
194 ± 21
196 ± 21
191 ± 23
194 ± 23
196 ± 24
PTHrP (n = 9)
12.53 ± 2.77
13.09 ± 2.76
13.02 ± 2.74
13.05 ± 2.73
13.03 ± 2.69
13.22 ± 2.76
13.06 ± 2.73
181 ± 15
182 ± 15
181 ± 15
179 ± 15
174 ± 15
176 ± 15
177 ± 16
PTH-L (n = 12)
7.22 ± 1.26
7.37 ± 1.18
7.15 ± 1.18
6.86 ± 1.10
6.75 ± 1.08
6.80 ± 1.09
6.66 ± 1.10
211 ± 21
208 ± 20
211 ± 20
207 ± 21
203 ± 20
205 ± 20
207 ± 30
ckPTH(1-34) doubled calcium flux through CAM from 12.5 nmol.h-1.cm2 to 23.5 nmol.h-1.cm2, ckPTHrP(1-34) from 6.5 nmol.h-1.cm2 to 11.5 nmol.h-1.cm2 and ckPTH-L(1-34) from 6.8 nmol.h-1.cm2 to 9.8 nmol.h-1.cm2 (Figure 6). Human PTH(1-34) induced a significant increase in transepithelial calcium transport in chicken CAM but had no effect on Xenopus abdominal skin (Figure 6). Salmon LHRH was used as a negative control and had no effect on calcium transport in either skin or CAM confirming the specificity of the effects observed with the chicken and Xenopus peptides.
In the current study, three PTH family members, PTH, PTHrP and PRH-L, were characterized in Xenopus and chicken. Preliminary functional analysis suggests the action on calcium uptake of the (1-34) N-terminal region is conserved in PTH family members. Comparison of sequence, structure and gene environment suggests they have evolved by gene duplication and deletion events. Moreover, a number of novel PTHrP splice variants with a variable 5'UTR were also identified. All three PTH family members are present in teleost and tetrapod genomes with the exception of eutherian mammals which have lost the PTH-L gene, probably because of specific gene or genome rearrangements during the mammalian radiation. This hypothesis is supported by the conservation in human chromosome 6 of genes linked to PTH-L in fish, Xenopus and chicken. Phylogenetic analysis supports previous theories that PTH-like family members evolved from a common ancestral precursor, from which tuberoinfundibular peptide 39 (TIP39) has also been suggested to have arisen . To date, PTH family homologues remain to be identified in invertebrates and their emergence in vertebrates coupled with their important role in calcium homeostasis and skeletal development suggest that their origin may be associated with the acquisition of a calcified endoskeleton.
Analysis of PTH family members in Xenopus and chicken indicates that similar post-translation modifications to those previously described for the human homologue occur [9, 16]. The bioactive N-terminal (1-34) peptide of PTH family members is the most conserved region of the protein (Figure 1). The physicochemical properties of amino acids in the N-terminal region including L24 and L28 which are important for receptor activation [39, 40], are maintained in Xenopus and chicken suggesting they may have similar functional roles across the vertebrates. Moreover, within this region the highest conservation is found in the first residues. Previous studies comparing activation of teleost and human PTHR by PTHrP and PTH suggests they have distinct activation profiles and indicate the C-terminal region of the protein is also involved [20, 23, 41].
In addition to amino acid sequence conservation, the gene organization of Xenopus and chicken PTH and PTH-L is also maintained (Figure 2) [14, 42]. However, although PTH-L splice isoforms have been found in Xenopus and Takifugu  no alternative PTH splice isoforms have been identified in any species to date. In contrast, the gene structure of PTHrP is poorly conserved between vertebrates and unique Xenopus and chicken isoforms which result from exon skipping events, were identified and resemble those reported for the human gene . In human, three PTHrP transcripts are expressed as a result of alternative promoter usage, two of which (139 and 141 deduced amino acids) are identical in size to those present in chicken. The only difference between the mature proteins in both human and chicken is the presence in the 1-141 PTHrP isoform of two extra C-terminal amino acids (Additional file 4). In Xenopus a unique PTHrP splice isoform results from a splice event within the osteostatin region and the incorporation of a novel coding sequence and 3'UTR giving rise to a longer peptide precursor (144 amino acids). In contrast, to terrestrial vertebrates including Xenopus where splice variants of PTH family members are common, none were identified in teleosts. Variation in the UTR has been associated with tissue-specific , developmental stage or cell state specific  regulatory mechanisms. The existence of splice variants suggests that complex regulatory mechanisms for this gene family were acquired within the tetrapod radiation and this may be related to the change in mineral homeostasis which accompanied the adaptation of vertebrates to a terrestrial environment [3, 14, 45].
The presence of distinct Xenopus and chicken PTHrP isoforms and their widespread distribution and expression in bone, cartilage, skin and kidney (classical tissues involved in calcium regulation) further supports their role as important calciotropic factors. The PTHrP transcripts identified in chicken are predicted to produce mature proteins with the same length as the human PTHrP(1-139) and PTHrP(1-141) proteins, although no homologue of the human PTHrP(1-173) was identified suggesting it may be a human innovation. The Xenopus and chicken PTHrP and PTH-L tissue expression overlaps in the majority of the tissues analysed suggesting widespread paracrine actions for the two proteins.
PTH distribution is more restricted and in chicken, as expected, is expressed abundantly and almost exclusively in the parathyroid gland (Figure 5). In Xenopus, we were not able to identify the parathyroid tissue and it has previously been noted to be inconspicuous and readily degenerates [36, 46]. In chicken PTH expression was also detected in the pituitary gland and in Xenopus brain/pituitary extracts, which is in agreement with studies which showed that immunoactive protein was detected in pituitaries from sheep , and fish [3, 48] (which lack an organized parathyroid gland structure). PTH immunoreactivity in brain and pituitary was also reported for several tetrapods, including chicken , but so far has only been confirmed in rabbit and rat brain/pituitary. Taken together these results suggest a high degree of conservation of pituitary PTH expression and possibly secretion across vertebrates, although in mouse the thymus is also a source of PTH . PTH expression in Xenopus lung has not, to our knowledge, been previously reported. However, the overall PTH tissue distribution largely coincides with the two PTH/PTHrP receptors identified in this organism . This supports the hypothesis that PTH may have a more paracrine action in lower vertebrates.
Although there was an overlapping tissue distribution of some of the transcripts of the three PTH family members, expression of PTH and PTH-L, unlike PTHrP, is more restricted (Figure 5). The PTHrP isoforms identified in chicken seem to conform to specific patterns and levels of abundance, although only one of the transcripts produces a different protein. With the exception of chicken PTHrP(1-141)5utrA, the other chicken PTHrP are expressed in cartilage at high levels confirming their important role in this tissue . However, in Xenopus PTHrP transcript seemed to be absent from cartilage. The different tissue expression profiles of PTH family members in Xenopus and chicken (and Takifugu ) suggest that specific modulation of gene expression occurs and detailed analysis of the promoter region may help clarify this question.
All Xenopus and chicken PTH-like peptides were found to promote unidirectional calcium influx (Figure 6). The differing effect of human PTH(1-34) in chicken and Xenopus is in keeping with what has been previously observed for the bovine peptide [52, 53]. However, after pre-treatment with Vitamin D, bovine PTH(1-34) is also able to stimulate calcium transport across the Rana pipiens skin epithelium . Xenopus PTH-L and chicken PTH peptides were the most effective in promoting calcium transport across the membranes in each specific assay. Similar results were obtained for transport across teleost larvae epithelia  and although more studies are required to establish their specific function, the results provide new insight into the interlink between evolution and function of the PTH family.
Although the three peptides enhance calcium transport, only PTHrP and PTH-L caused changes in the short-circuit current in Xenopus skin, indicating an additional effect on transport of ions other than calcium (Table 1). Similar effects on the short-circuit current in the same range of PTH concentrations have previously been observed with A6 cells derived from Xenopus kidney ; on sodium transport of PT cells derived from chicken kidney ; and with PTHrP on fish intestine . Our results further substantiate the effect of the PTH family of proteins on the short-circuit current and suggest that the action of the different peptides on the short-circuit current is tissue dependent and may vary with species.
While PTHrP and PTH genes have been identified in teleosts and tetrapods, PTH-L seems to be absent from eutherian mammals and it was recently suggested to be the functional homologue of mammalian PTH, in fish . In the present study, Xenopus PTH-L in common with teleost PTH-L, was the most potent peptide promoting calcium transport across epithelia. In chicken, a different scenario was observed and PTH seemed to be more efficient in stimulating calcium transport. Taking into consideration a) the reduced calciotropic activity of PTH-L in chicken, b) the overlapping distribution between PTH-L and PTHrP and c) the absence of a PTH-L in the human genome (data not shown), it is proposed that a transitory functional role between the vertebrate PTH-L and the tetrapod PTHrP and PTH occurred after the amphibian divergence. The tetrapod PTH-L probably acquired a minor role and became potentially non-functional and was consequently eliminated from the human genome. In contrast, PTH which in teleosts and Xenopus appears to be a paracrine factor seems to have gained a more important functional role during evolution and became a major endocrine factor with a restricted production in a highly specialized structure, the parathyroid gland . Future studies using more in depth functional studies and other organisms will be needed to support this hypothesis.
The parathyroid hormone family contains 3 principal members, PTH, PTHrP and the recently identified PTH-L. In teleosts there are 5 genes which encode PTHrP (2), PTH (2) and PTH-L and in tetrapods there are 3 genes (PTHrP, PTH and PTH-L), the exception is placental mammals which have 2 genes and lack a PTH-L. Gene structure of PTH and PTH-L seems to be conserved throughout the vertebrates while PTHrP gene structure is divergent and it has acquired new exons and alternative promoters. The highly conserved Xenopus and chicken N-terminal (1-34) region of PTH, PTHrP and PTH-L has the capacity to stimulate calcium uptake across, respectively, the frog skin and chicken chorionallantois membranes, indicating a conserved role in calcium metabolism possibly via similar receptors. It is hypothesized that PTH family genes appeared at approximately the same time during the vertebrate radiation and evolved via gene duplication/deletion events. During evolution PTH-L was lost from the genome of eutherian mammals, while PTH, which has a paracrine distribution in lower vertebrates, became the product of a specific endocrine tissue, the parathyroid gland and gained an important role in calcium regulation. The PTHrP gene acquired during its evolution a disparate and more complex organization in vertebrates probably associated with its paracrine nature and pluripotent functions.
Animals and tissue collection
Adult Xenopus laevis were purchased from Xenopus Express (France) and maintained at 22°C. Adult chickens (Gallus gallus) were supplied by a local farm. Frogs and chickens were anesthetized with diethyl ether (Merck) and euthanized by double pithing and decapitation, respectively. Fertile white leghorn chicken eggs were obtained from Quinta da Freiria (Serpa, Portugal) and kept in humid conditions in an automatic incubator (Brinseca OCTAGON 40) at 37.5°C with gentle rotation. Tissues were collected, immediately frozen in liquid nitrogen and stored at -80°C.
All animal experiments were performed in accordance with Portuguese legislation under a "Group-1" licence from the Direcção-Geral de Veterinária, Ministério da Agricultura, do Desenvolvimento Rural e das Pescas, Portugal.
In silico identification and validation of PTH-like transcripts
Putative PTH-like genes were identified in the amphibian (Xenopus tropicalis) and chicken (Gallus gallus) genome and EST databases by sequence similarity searches using human PTH (AAH96144.1) and PTHrP (AAA60221) and Takifugu rubripes PTHA (CAG26460.1), PTHB (CAG26461.1), PTHrPA (CAB94712.1), PTHrPB (CAG26459.2) and PTH-L (CAG26462.1) and the default settings of tBLASTn . Amphibian and chicken genomes were accessed via Ensembl (http://www.ensembl.org), Xenbase (http://www.xenbase.org) and NCBI (http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/), respectively. EST sequences were retrieved from NCBI and BBSRC ChickEST databases (http://www.chick.manchester.ac.uk/). Isoforms of Xenopus and chicken transcripts were named according to the size of the deduced mature protein and the length of their 5'UTR region (A to D). Puffer fish (Takifugu rubripes) and human (Homo sapiens) genome assemblies available in Ensembl and the human dbEST NCBI database were also interrogated with Xenopus and chicken PTH family members to identify potential novel isoforms.
Primer pairs (same prefix ending in fw or rv) used to amplify the Xenopus and chicken PTH family members.
18s fw tgacggaagggcaccaccag*
18s rv aatcgctccaccaactaagaacgg*
RNA extractions and quantitative gene expression
Total RNA (tRNA) extracted from adult frog and chicken tissues using Tri Reagent (Sigma Aldrich, Spain) was treated with 1 U DNase (DNA-free Kit, Ambion, UK) for 30 min at 37°C. DNase treated tRNA (500 ng) was denatured at 65°C for 5 min, quenched on ice for 5 min and used for cDNA synthesis in a 20 μl reaction volume containing 10 ng of pd(N)6 random hexamers (GE Healthcare, UK), 2 mM dNTPs, 100 U of MMLV-RT and 20 U RNasin® Plus RNase inhibitor. cDNA was synthesized for 10 min at 20°C followed by 50 min at 42°C and 72°C for 5 min.
Quantitative real-time PCR (q-PCR) amplifications of Xenopus and chicken cDNAs used the primers listed in Table 2 designed with Primer Premier and Beacon Design software (Premier Biosoft Int., Palo Alto, CA). Triplicate reactions (20 μl final volume) containing 1 μl of template cDNA and 1 pmol of each primer were prepared and reactions repeated twice using Power SYBR Green PCR master mix (Applied Biosystems, Foster City, CA, USA) and a Bio-Rad iClycler iQ thermocycler system (software version 3.1.7050, Bio-rad, Life Science Group, USA). The thermocycle consisted of an initial step at 95°C for 10 min followed by 55 cycles of 95°C for 30 sec, 20 sec at an appropriate temperature for annealing of each primer pair, and 72°C for 30 sec. Annealing temperatures were 60°C for r18S; 56°C, 59°C and 53°C for the Xenopus PTH, PTHrP and PTH-L, respectively; and for the chicken amplicons 53°C for PTHrP(1-141)5utrB; 55°C for PTHrP(1-139); 57°C for PTH, PTH-L and PTHrP(1-141)5utrC; 58°C for PTHrP(1-141)5utrD; and 60°C for PTHrP(1-141)5utrA. Melting curves were performed to detect nonspecific products and primer dimers. PCR products were quantified relative to a standard curve constructed using serial dilutions of linearized DNA plasmid of the target transcript. Genomic contamination was monitored by including tRNA samples without MMLV-RT and r18S was used as the internal quantitative control for normalization. Relative gene expression was calculated as: number of copies (NC) = (A × 6.022 × 1023)/(B × 1 × 109 × 650 kDa), where A is the template quantity (ng of vector plus insert), B the template length (bp vector plus insert), and 650 kDa is the average weight of a base pair according to .
Sequence comparisons and phylogenetic analysis
Multiple sequence alignments of PTH family prepro- and mature proteins were performed with ClustalX using the following parameters: Gonnet series matrix, Gap opening penalty 10, Gap extension 0.2 . Alignments were displayed in GeneDoc (http://www.psc.edu/biomed/genedoc), manually edited and percentages of sequence identity and similarity calculated. Phylogenetic analysis was performed using both Neighbor Joining and Maximum Parsimony Methods  with 1000 and 100 bootstrap replicates, respectively, using MEGA 3.1 software .
Gene organization and linkage analysis
The gene organization of the Xenopus and chicken PTH-like members was deduced using Spidey software (mRNA-to-genomic alignment; http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/IEB/Research/Ostell/Spidey) with the aid of Ensembl in silico gene annotation and the predicted structures were manually edited using intron/exon splice boundary consensus sequences (AG/GT) and by comparison with available EST data. The immediate gene environment of the PTH, PTHrP and PTH-L genes in Xenopus was assessed from scaffold annotation in Ensembl and the chicken homologue regions using Mapview (http://0-www.ncbi.nlm.nih.gov.brum.beds.ac.uk/mapview). To verify if conservation of the PTH-L genome region in amphibian and chicken genomes also exists in human and puffer fish, a search for homologues of neighbouring genes was performed.
Electrophysiological measurements and unidirectional calcium fluxes
Previous studies established that PTH promotes calcium transport across the frog skin  and chicken chorionallantois membranes (CAMs)  thus providing assays to test the activity of the new PTH family peptides. The effect of Xenopus and chicken PTH(1-34), PTHrP(1-34) and PTH-L(1-34) (Genemed Synthesis, Inc., San Antonio, Texas, USA) on calcium transport was assessed in vitro using Ussing chambers with adult Xenopus abdominal skin and CAMs from chicken embryos of 16 to 18 days [stages 42 HH and 44 HH, respectively; ]. Human PTH (1-34) (Bachem, Germany) and salmon Luteinizing hormone-releasing hormone (LHRH, Bachem) were used as positive and negative controls, respectively.
The Xenopus experiments were carried out at 22-23°C in Ringers solution (2.4 mM NaHCO3; 113.8 mM NaCl; 1.9 mM KC2H3O2; 1 mM CaCl2; 2.1 mM NaC2H3O2; 0.5 mM Mg(C2H3O2)2 and 5 mM glucose) at pH 8.1 with oxygenation provided by atmospheric air. The chicken experiments were carried out at 37°C using a standard bathing solution [130 mM NaCl; 1 mM MgSO4; 2 mM CaCl2; 8 mM KH2PO4; 15 mM glucose ] at pH 7.4 maintained by gassing with a mixture of 5% CO2 in O2.
The Xenopus and chicken membranes were pinned over the circular aperture of Ussing chambers (1 cm2) and 8 ml of saline solution was added to each half-chamber. Epithelial preparations were stabilized for 30 min and the saline solution was replaced before the addition of radioactive labelled 45Ca2+ (0.75 μCi/ml CaCl2; GE Healthcare, UK) to the mucosa/chorion side. Time zero was established 15 min after 45Ca2+ addition. Fluid samples (400 μl) were collected every 30 minutes over a total of two hours from the serosa/allantoic side and the first 2 samples served as controls prior to peptide (10 nM) addition. The volume sampled was replaced by an equal amount of saline and replicate 200 μl samples of the mucosa/chorion side were used to calculate calcium specific activity by counting in a liquid scintillation counter (Beckamn LS 6000IC, USA). All radiotracer experiments were performed under short circuit conditions.
Bio-electrical variables were recorded with a DVC-1000 voltage-clamp amplifier (WPI, Sarasota, US) by means of Ag-AgCl electrodes connected to the chamber by agar bridges (2 M KCl/3% agar) and data was collected via a Data-Trax acquisition system (WPI, Sarasota, US) connected to a personal computer (PC). At the start of experiments the trans-epithelial potential (Vt, mV) was recorded to check tissue integrity and then short circuited (Vt = 0) for subsequent experiments. Short circuit current (Isc, μAmp/cm2) was constantly recorded and the current deflections produced by 3 mV pulses once every minute were used for calculation of tissue resistance (Rt, Ω.cm2) using Ohm's law.
Calcium fluxes were calculated using the equation: , where Δ[45Ca] BI represents the increase in radioactivity in the basolateral side (BI) half-chamber and SAAp the apical side (Ap) specific activity (cpm/nmol) . Data is presented as mean ± standard error of the mean (SEM). A paired Student's t-test was used to test the effect of peptide on calcium fluxes and one-way ANOVA was used to test the effect of peptide on electrophysiological measurements (Isc e Rt) using SigmaStat v.3.11 (Systat software, Inc., USA). The significance level was 5%.
This research was funded by European Social Fund and the Portuguese National Science Foundation (project PTDC/CVT/66735/2006 and fellowships SFRH/BD/30881/2006 and BPD/30560/2006, respectively, to PLCP and JCRC) and Ceratonia prize (University of Algarve/Caixa Geral de Depósitos) to AVMC.
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