Table 1 List of attributes used for the predictions
From: Predicting genome-wide redundancy using machine learning
# | Attribute | Type | Description |
|---|---|---|---|
1 | CLUSTALW Score | Sequence | ClustalW alignment score |
2 | E-value | Sequence | BLAST alignment E-value |
3 | Isoe Pt Diff | Sequence | percent difference in isoelectric points |
4 | Mol W Diff | Sequence | percent difference in molecular weight |
5 | Nonsyn Subst Rate | Sequence | non-synonymous substitution rate |
6 | Protien Domain Sharing Index | Sequence | intersection/union of predicted protein domain |
7 | Score | Sequence | BLAST alignment bit score |
8 | All Experiments | Expression | 2799 ATH1 microarray experiments |
9 | Atlas of Arabidopsis Development | Expression | 264 ATH1 microarray experiments |
10 | Atmosphereric Conditions | Expression | 172 ATH1 microarray experiments |
11 | Change Light | Expression | 127 ATH1 microarray experiments |
12 | Change Temperature | Expression | 112 ATH1 microarray experiments |
13 | Compound Based Treatment | Expression | 248 ATH1 microarray experiments |
14 | Genetic Modification | Expression | 952 ATH1 microarray experiments |
15 | Genetic Variation | Expression | 22 ATH1 microarray experiments |
16 | Growth Condition Treatments | Expression | 74 ATH1 microarray experiments |
17 | Growth Conditions | Expression | 503 ATH1 microarray experiments |
18 | Hormone Treatments | Expression | 256 ATH1 microarray experiments |
19 | Induced Mutation | Expression | 18 ATH1 microarray experiments |
20 | Infect | Expression | 61 ATH1 microarray experiments |
21 | Injury Design | Expression | 28 ATH1 microarray experiments |
22 | Irradiate | Expression | 28 ATH1 microarray experiments |
23 | Light | Expression | 12 ATH1 microarray experiments |
24 | Media | Expression | 54 ATH1 microarray experiments |
25 | Organism Part | Expression | 806 ATH1 microarray experiments |
26 | Organism Status | Expression | 16 ATH1 microarray experiments |
27 | Pathogen Infection | Expression | 200 ATH1 microarray experiments |
28 | Root Cells | Expression | 59 ATH1 microarray experiments |
29 | Root Cells Iron Salt Treatments | Expression | 17 ATH1 microarray experiments |
30 | Root Cells Nitrate Treatments | Expression | 20 ATH1 microarray experiments |
31 | Root Developmental Zones | Expression | 11 ATH1 microarray experiments |
32 | Root Developmental Zones (Fine Scale) | Expression | 24 ATH1 microarray experiments |
33 | Root Regeneration | Expression | 11 ATH1 microarray experiments |
34 | Seed Development | Expression | 6 ATH1 microarray experiments |
35 | Set Temperature | Expression | 4 ATH1 microarray experiments |
36 | Starvation | Expression | 22 ATH1 microarray experiments |
37 | Stimulus or Stress | Expression | 320 ATH1 microarray experiments |
38 | Strain or Line | Expression | 32 ATH1 microarray experiments |
39 | Temperature | Expression | 15 ATH1 microarray experiments |
40 | Time Series Design | Expression | 427 ATH1 microarray experiments |
41 | Unknown Experimental Design | Expression | 8 ATH1 microarray experiments |
42 | Wait | Expression | 17 ATH1 microarray experiments |
43 | Water Availability | Expression | 40 ATH1 microarray experiments |