Table 1 Genomes used in our analyses
Organism | Reference | Protein Database |
|---|---|---|
Apis mellifera (bee) | [85] | protein (8/7/2006), NCBI |
Bombyx mori (silkworm) | [86] | GLEAN merged consensus, silkworm genome consortium |
Branchiostoma floridae (lancelet) | [87] | annotated proteins v1 |
Capitella spI (capitella) | [JGI, unpublished data] | filtered models v1, JGI |
Caenorhabditis elegans (roundworm) | [88] | WS180.49 peptides, wormbase |
Ciona intestinalis (tunicate) | [89] | filtered models v1, JGI |
Danio rerio (zebrafish) | NCBI | protein (6/11/2008) |
Daphnia pulex (waterflea) | [JGI, unpublished data] | filtered models v1.1, JGI |
Drosophila melanogaster (fruit fly) | NCBI | BDGP5.4.49 peptides |
Gallus gallus (chick) | NCBI | protein (11/28/2006) |
Helobdella robusta (leech) | [JGI, unpublished data] | filtered models v3, JGI |
Lottia gigantea (snail) | [JGI, unpublished data] | filtered models v1, JGI |
Monosiga brevicollis (monosiga) | [90] | filtered models v1, JGI |
Mus musculus (mouse) | NCBI | annotated proteins v3, |
Nematostella vectensis (anemone) | [91] | filtered models v1, JGI |
Takifugu rubripes (pufferfish) | [JGI, unpublished data [92]] | filtered models v4, JGI |
Tribolium castaneum (beetle) | NCBI | protein (6/5/2008) |
Trichoplax adhaerens (trichoplax) | JGI | filtered models v1, JGI |
Xenopus tropicalis (frog) | JGI | filtered models v4, JGI |