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Table 11 COGs used for the comparative analysis of Maximum Likelihood trees for individual protein families

From: Genome trees constructed using five different approaches suggest new major bacterial clades

COG

speca

protb

Name

COG0012

40

41

Predicted GTPase

COG0013

40

40

Alanyl-tRNA synthetase

COG0016

40

40

Phenylalanyl-tRNA synthetase alpha submit

COG0018

40

41

Arginyl-tRNA synthetase

COG0020

37

40

Undecaprenyl pyrophosphate synthase

COG0048

39

39

Ribosomal protein S12

COG0049

40

41

Ribosomal protein S7

COG0051

40

40

Ribosomal protein S10

COG0052

40

40

Ribosomal protein S2

COG0060

40

40

Isoleucyl-tRNA synthetase

COG0061

37

40

Predicted kinase

COG0064

30

30

Asp-tRNAAsn/Glu-tRNAGIn amidotransferase B subunit (PET 112 homolog)

COG0072

40

40

Phenylalanyl-tRNA synthetase beta subunit

COG0080

40

41

Ribosomal protein LI 1

COG0081

40

40

Ribosomal protein LI

COG0082

33

33

Chorismate synthase

COG0085

40

40

DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in

   

Mjan, Mthe, Aful)

COG0087

40

40

Ribosomal protein L3

COG0088

40

40

Ribosomal protein L4

COG0090

40

40

Ribosomal protein L2

COG0091

40

40

Ribosomal protein L22

COG0092

40

40

Ribosomal protein S3

COG0093

39

39

Ribosomal protein LI 4

COG0094

40

40

Ribosomal protein L5

COG0096

40

40

Ribosomal protein S8

COG0097

40

40

Ribosomal protein L6

COG0098

40

40

Ribosomal protein S5

COG0099

40

40

Ribosomal protein S13

COG0100

39

39

Ribosomal protein S11

COG0101

38

38

Pseudouridylate synthase (tRNA psi55)

COG0102

40

40

Ribosomal protein LI 3

COG0103

40

40

Ribosomal protein S9

COG0104

31

31

Adenylosuccinate synthase

COG0105

33

33

Nucleoside diphosphate kinase

COG0126

39

39

3-phosphoglycerate kinase

COG0127

34

35

Xanthosine triphosphate pyrophosphatase

COG0128

33

35

5-enolpyruvylshikimate-3-phosphate synthase

COG0130

37

37

Pseudouridine synthase

COG0134

30

30

Indole-3-glycerol phosphate synthase

COG0135

30

30

Phosphoribosylanthranilate isomerase

COG0143

40

41

Methionyl-tRNA synthetase

COG0148

39

43

Enolase

COG0149

39

41

Triosephosphate isomerase

COG0151

30

30

Phosphoribosylamine-glycine ligase

COG0152

30

32

Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase

COG0159

31

31

Tryptophan synthase alpha chain

COG0162

40

43

Tyrosyl-tRNA synthetase

COG0164

35

35

Ribonuclease HII

COG0166

35

35

Glucose-6-phosphate isomerase

COG0167

32

37

Dihydroorotate dehydrogenase

COG0169

33

39

Shikimate 5-dehydrogenase

COG0171

35

37

NAD synthase

COG0172

40

40

Seryl-tRNA synthetase

COG0173

30

30

Aspartyl-tRNA synthetase

COG0178

31

33

Excinuclease ATPase submit

COG0180

40

43

Tryptophanyl-tRNA synthetase

COG0190

33

33

5,10-methylene-tetrahydrofolate dehydrogenase

COG0193

30

30

Peptidyl-tRNA hydrolase

COG0197

40

40

Ribosomal protein L16/L10E

COG0198

40

40

Ribosomal protein L24

COG0200

40

40

Ribosomal protein LI 5

COG0201

40

41

Preprotein translocase subunit SecY

COG0202

40

40

DNA-directed RNA polymerase alpha subunit/40 kD subunit

COG0203

30

30

Ribosomal protein LI 7

COG0215

38

39

Cysteinyl-tRNA synthetase

COG0216

30

30

Protein chain release factor A

COG0221

31

31

Inorganic pyrophosphatase

COG0222

30

30

Ribosomal protein L7/L12

COG0223

30

34

Methionyl-tRNA formyltransferase

COG0231

40

46

Translation elongation factor P/translation initiation factor eIF-5A

COG0233

30

30

Ribosome recycling factor

COG0237

39

41

Dephospho-CoA kinase

COG0242

30

35

N-formylmethionyl-tRNA deformylase

COG0244

40

40

Ribosomal protein L10

COG0250

40

43

Transcription antiterminator

COG0256

40

40

Ribosomal protein LI 8

COG0258

40

47

5'-3' exonuclease (including N-terminal domain of Poll)

COG0261

30

30

Ribosomal protein L21

COG0264

30

30

Translation elongation factor Ts

COG0272

30

31

NAD-dependent DNA ligase (contains BRCT domain type II)

COG0275

30

30

Predicted S-adenosylmethionine-dependent methyltransferase involved in cell

   

envelope biogenesis

COG0284

32

32

Orotidine-5'-phosphate decarboxylase

COG0290

30

30

Translation initiation factor IF3

COG0292

30

30

Ribosomal protein L20

COG0294

33

36

Dihydropteroate synthase

COG0305

30

31

Replicative DNA helicase

COG0313

30

31

Predicted methyltransferases

COG0319

30

30

Predicted metal-dependent hydrolase

COG0335

30

30

Ribosomal protein LI 9

COG0336

30

30

tRNA-(guanine-N1)-methyltransferase

COG0340

32

34

Biotin-(acetyl-CoA carboxylase) ligase

COG0343

35

36

Queuine/archaeosine tRNA-ribosyltransferase

COG0351

31

34

Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase

COG0359

30

30

Ribosomal protein L9

COG0441

40

43

Threonyl-tRNA synthetase

COG0442

40

40

Prolyl-tRNA synthetase

COG0452

32

32

Phosphopantothenoylcysteine synthetase/decarboxylase

COG0461

33

34

Orotate phosphoribosyltransferase

COG0462

37

40

Phosphoribosylpyrophosphate synthetase

COG0481

30

30

Membrane GTPase LepA

COG0495

40

41

Leucyl-tRNA synthetase

COG0504

38

38

CTP synthase (UTPammonia lyase)

COG0519

33

33

GMP synthase – PP-ATPase domain

COG0522

40

40

Ribosomal protein S4 and related proteins

COG0525

40

40

Valyl-tRNA synthetase

COG0528

40

40

Uridylate kinase

COG0532

40

40

Translation initiation factor 2 (GTPase)

COG0533

40

40

Metal-dependent proteases with possible chaperone activity

COG0536

30

30

Predicted GTPase

COG0540

30

30

Aspartate carbamoyltransferase, catalytic chain

COG0541

40

40

Signal recognition particle GTPase

COG0544

30

30

FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)

COG0547

30

35

Anthranilate phosphoribosyltransferase

COG0552

40

40

Signal recognition particle GTPase

COG0556

31

31

Helicase subunit of the DNA excision repair complex

COG0571

30

30

dsRNA-specific ribonuclease

COG0573

30

34

ABC-type phosphate transport system, permease component

COG0576

34

35

Molecular chaperone GrpE (heat shock protein)

COG0581

30

34

ABC-type phosphate transport system, permease component

COG0587

30

35

DNA polymerase III alpha subunit

COG0597

30

30

Lipoprotein signal peptidase

COG0653

30

32

Preprotein translocase subunit SecA (ATPase, RNA helicase)

COG0682

30

30

Prolipoprotein diacylglyceryltransferase

COG0691

30

30

tmRNA-binding protein

COG0706

30

34

Preprotein translocase subunit YidC

COG0781

30

30

Transcription termination factor

COG0858

30

30

Ribosome-binding factor A

COG1160

30

30

Predicted GTPases

COG1214

30

30

Inactive homologs of metal-dependent proteases, putative molecular chaperones

COG1466

30

30

DNA polymerase III delta subunit

COG1488

32

35

Nicotinic acid phosphoribosyltransferase

COG2812

30

30

DNA polymerase III, gamma/tau subunits

  1. aNumber of represented species. bNumber of proteins.
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BMC Ecology and Evolution

ISSN: 2730-7182

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